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Sequence alignment with bowtie2
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The end
This concludes the
bowtie2
tutorial!
Here are additional resources to check out:
Official
bowtie2
Documentation
Installation Instructions
Codebase
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How does this work?
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Lessons
Introduction
Sequence alignment with bowtie2
The data
Aligning example reads
Align single-end reads
Align paired-end reads
Local alignment
Downstream tools
Use samtools to explore alignments
Use bcftools to call variants
The end
The end