K-mer counting with Jellyfish
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Exercise: K-mer counting

Now it’s your turn!

Use Jellyfish to count all 9-mers in the Chikungunya genome (chikungunya.fa).

To estimate the value of the -s parameter, use the approach described previously.

Exercise Criteria:
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  • File chikungunya.jf exists
  • File chikungunya.jf contains the output of running jellyfish count to get 9-mers in the Chikungunya genome
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