IGV tutorial
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Inspecting SNPs, SNVs, and SVs

Homozygous deletion

Navigate to region chr21:19,324,469-19,331,468:

Update the track settings by clicking the gear icon on the right:

  • Turn on View as pairs
  • Select Display mode: Expand
  • Color by Pair orientation and insert size

Click on a red read pair to pull up information about alignments.