Bedtools tutorial
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Exercises

Find exons in 500kb regions

Count how many exons occur in each 500kb interval (“window”) in the human genome. Use the files exons.bed and genome.txt as input.

Exercise Criteria:
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  • File windows.bed contains a list of all regions of 500kb in the genome
  • File windows.exons.bedg contains a list of each 500kb interval and how many exons were found within that region
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