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Bedtools tutorial
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The end
This concludes the
bedtools
tutorial!
Here are additional resources to check out:
The sandbox.bio interactive article about genomic ranges
, where you can move and resize genomic ranges and see the impact on common bedtools commands.
Official
bedtools
Documentation
Installation Instructions
Google Groups
Codebase
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Memory usage
Import
Import files
Import a folder
Import from URL
Export
Export files
Export terminal as HTML
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Reset this tutorial's files
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Help
How does this work?
Keyboard shortcuts
Lessons
Introduction
Genomic intervals with bedtools
The data
Bedtools help
bedtools intersect
Intersect regions
Find overlaps
Count overlaps
Faster with sorted data
Intersect multiple files
bedtools merge
Merge regions
Merge and count intervals
Merge nearby features
bedtools complement
Find uncovered regions
bedtools genomecov
Measure genome-wide coverage
bedtools jaccard
Measure dataset similarity
Exercises
Find non-exons
Find exons in 500kb regions
Find flanking splice sites
Find overlapping exons
Calculate Jaccard statistics
The end
The end